Aliivibrio fischeri strain 5F97

Gram-negativeRodNon-motileFacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Vibrionales

Family

Vibrionaceae

Genus

Aliivibrio

Description

Aliivibrio fischeri strain 5F97 is a facultative anaerobic, Gram-negative bacterium characterized by its rod shape and presence of flagella. This strain is a heterotroph, deriving its energy from organic compounds, and typically exists as single cells. It thrives optimally at a temperature of 20°C and falls within the mesophilic temperature range, indicating its adaptability to moderate environmental conditions. This bacterium is non-pathogenic and forms a symbiotic relationship with specific hosts, notably the squid species Euprymna scolopes and other members of the order Sepiida. Such symbiotic interactions are crucial for the development and functioning of the host organism, contributing to essential biological processes. The presence of a single replicon and a double membrane structure suggests a streamlined genomic organization, which may facilitate its adaptability in various habitats. The ecological significance of Aliivibrio fischeri strain 5F97 lies in its role within the marine ecosystem, particularly in its interactions with cephalopods. By forming mutualistic relationships with these marine animals, A. fischeri plays a vital role in their development and behavior, particularly in light production and camouflage. Such interactions highlight the importance of microbial symbionts in influencing the ecology and evolution of their hosts, showcasing the intricate connections within marine ecosystems.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderVibrionales
FamilyVibrionaceae
GenusAliivibrio
SpeciesAliivibrio fischeri
Strainstrain 5F97

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranes2
Image of Aliivibrio fischeri strain 5F97
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperature20
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipSymbiotic
Host(s)Sparus aurata, Euprymna scolopes, Sepiida
Cell arrangementSingles
SporulationNot Available
Energy sourceHeterotroph
PathogenicityNon-pathogenic

Genome Summary

Aliivibrio fischeri strain 5F97 5F97_contig_9, whole genome

Gene Summary

Adenine Count

1345339 bp

Thymine Count

1330129 bp

Guanine Count

802797 bp

Cytosine Count

862748 bp

Genome Length

4343102 bp

Protein-coding Genes

3800 genes

Non-Coding Genes

209 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
bifunctional udp-sugar hydrolase/5'-nucleotidaseA6E13_00785Not AvailableNegative175203 - 17686461115.5
chemotaxis proteinA6E13_00790Not AvailablePositive177289 - 17916368194.9
nitrite reductase large subunitA6E13_00795Not AvailablePositive179460 - 18203694028.5
nitrite reductase small subunitA6E13_00800Not AvailablePositive182039 - 18236812075.4
formate transporterA6E13_00805Not AvailablePositive182478 - 18328728746.3
uroporphyrinogen-iii c-methyltransferaseA6E13_00810Not AvailablePositive183416 - 18419228187.9
3-deoxy-8-phosphooctulonate synthaseA6E13_00815Not AvailableNegative184270 - 18512431019.5
hypothetical proteinA6E13_00820Not AvailableNegative185136 - 18594831075.4
invasion proteinA6E13_00825Not AvailableNegative185951 - 18633414125.0
protein-(glutamine-n5) methyltransferase, release factor-specificA6E13_00830Not AvailableNegative186350 - 18720431747.7

Displaying genes 341 – 350 of 4009 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

6 records
Metabolite IDMetabolite nameStructureCAS number
BASm0001279(6S)-5-methyl-5,6,7,8-tetrahydrofolateC20H23N7O6Chemical structure of (6S)-5-methyl-5,6,7,8-tetrahydrofolateNot available
Average457.4399Da
Monoisotopic457.1709815Da
BASm0003276S-(5-deoxy-D-ribos-5-yl)-L-homocysteineC9H17NO6SChemical structure of S-(5-deoxy-D-ribos-5-yl)-L-homocysteine15912-98-8
Average267.299Da
Monoisotopic267.077658Da
BASm0015880N-(3-oxodecanoyl)-L-homoserine lactoneC14H23NO4Chemical structure of N-(3-oxodecanoyl)-L-homoserine lactoneNULL
Average269.341Da
Monoisotopic269.162708225Da
BASm00172855-MethylthioriboseC6H12O4SChemical structure of 5-Methylthioribose23656-67-9
Average180.222Da
Monoisotopic180.045629562Da
BASm00189185'-DeoxyriboseC5H10O4Chemical structure of 5'-DeoxyriboseNULL
Average134.1305Da
Monoisotopic134.057908808Da
BASm0034737(6S)-5,6,7,8-tetrahydrofolic acidC19H23N7O6Chemical structure of (6S)-5,6,7,8-tetrahydrofolic acidNULL
Average445.4292Da
Monoisotopic445.170981503Da

Displaying 1–6 of 6 metabolites

Health Effects

No health effects information available for this bacterium.