Aliivibrio fischeri strain 5F97

Gram-negativeRodNon-motileFacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Vibrionales

Family

Vibrionaceae

Genus

Aliivibrio

Description

Aliivibrio fischeri strain 5F97 is a facultative anaerobic, Gram-negative bacterium characterized by its rod shape and presence of flagella. This strain is a heterotroph, deriving its energy from organic compounds, and typically exists as single cells. It thrives optimally at a temperature of 20°C and falls within the mesophilic temperature range, indicating its adaptability to moderate environmental conditions. This bacterium is non-pathogenic and forms a symbiotic relationship with specific hosts, notably the squid species Euprymna scolopes and other members of the order Sepiida. Such symbiotic interactions are crucial for the development and functioning of the host organism, contributing to essential biological processes. The presence of a single replicon and a double membrane structure suggests a streamlined genomic organization, which may facilitate its adaptability in various habitats. The ecological significance of Aliivibrio fischeri strain 5F97 lies in its role within the marine ecosystem, particularly in its interactions with cephalopods. By forming mutualistic relationships with these marine animals, A. fischeri plays a vital role in their development and behavior, particularly in light production and camouflage. Such interactions highlight the importance of microbial symbionts in influencing the ecology and evolution of their hosts, showcasing the intricate connections within marine ecosystems.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderVibrionales
FamilyVibrionaceae
GenusAliivibrio
SpeciesAliivibrio fischeri
Strainstrain 5F97

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranes2
Image of Aliivibrio fischeri strain 5F97
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperature20
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipSymbiotic
Host(s)Sparus aurata, Euprymna scolopes, Sepiida
Cell arrangementSingles
SporulationNot Available
Energy sourceHeterotroph
PathogenicityNon-pathogenic

Genome Summary

Aliivibrio fischeri strain 5F97 5F97_contig_9, whole genome

Gene Summary

Adenine Count

1345339 bp

Thymine Count

1330129 bp

Guanine Count

802797 bp

Cytosine Count

862748 bp

Genome Length

4343102 bp

Protein-coding Genes

3800 genes

Non-Coding Genes

209 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
nif3-like dinuclear metal center hexameric proteinA6E13_00585Not AvailableNegative129962 - 13071727895.2
phosphoglucomutase, alpha-d-glucose phosphate-specificA6E13_00590Not AvailableNegative130782 - 13242859328.3
replication initiation regulator seqaA6E13_00595Not AvailableNegative132477 - 13301920209.3
esteraseA6E13_00600Not AvailablePositive133115 - 13389129103.0
hypothetical proteinA6E13_00605Not AvailablePositive133979 - 1342008134.21
flavodoxinA6E13_00610Not AvailablePositive134260 - 13478719807.1
duf4442 domain-containing proteinA6E13_00615Not AvailableNegative134841 - 13530518201.9
ferric iron uptake transcriptional regulatorA6E13_00620Not AvailablePositive135486 - 13592916640.7
glutamine--trna ligaseA6E13_00625Not AvailableNegative136007 - 13766563427.8
pts glucose transporter subunit iibcA6E13_00630Not AvailableNegative137841 - 13933452525.8

Displaying genes 301 – 310 of 4009 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

6 records
Metabolite IDMetabolite nameStructureCAS number
BASm0001279(6S)-5-methyl-5,6,7,8-tetrahydrofolateC20H23N7O6Chemical structure of (6S)-5-methyl-5,6,7,8-tetrahydrofolateNot available
Average457.4399Da
Monoisotopic457.1709815Da
BASm0003276S-(5-deoxy-D-ribos-5-yl)-L-homocysteineC9H17NO6SChemical structure of S-(5-deoxy-D-ribos-5-yl)-L-homocysteine15912-98-8
Average267.299Da
Monoisotopic267.077658Da
BASm0015880N-(3-oxodecanoyl)-L-homoserine lactoneC14H23NO4Chemical structure of N-(3-oxodecanoyl)-L-homoserine lactoneNULL
Average269.341Da
Monoisotopic269.162708225Da
BASm00172855-MethylthioriboseC6H12O4SChemical structure of 5-Methylthioribose23656-67-9
Average180.222Da
Monoisotopic180.045629562Da
BASm00189185'-DeoxyriboseC5H10O4Chemical structure of 5'-DeoxyriboseNULL
Average134.1305Da
Monoisotopic134.057908808Da
BASm0034737(6S)-5,6,7,8-tetrahydrofolic acidC19H23N7O6Chemical structure of (6S)-5,6,7,8-tetrahydrofolic acidNULL
Average445.4292Da
Monoisotopic445.170981503Da

Displaying 1–6 of 6 metabolites

Health Effects

No health effects information available for this bacterium.