Flavobacterium crassostreae strain LPB0076 LPBF77

rodaerobic

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Flavobacteriia

Order

Flavobacteriales

Family

Flavobacteriaceae

Genus

Flavobacterium

Description

Flavobacterium crassostreae strain LPB0076 (accession LVEP00000000.1) is a Gram-negative, aerobic bacterium characterized by its rod shape and non-motile nature. This strain is part of the mesophilic temperature range, with an optimal growth temperature of 25°C. It possesses flagella, which are typically associated with motility; however, it is classified as non-motile, suggesting the flagella may play other roles in its physiology or ecology. The presence of a single replicon indicates a streamlined genomic organization, which may contribute to its adaptability in various environmental conditions. As a member of the Flavobacterium genus, this strain is likely involved in the degradation of organic matter, particularly in aquatic environments, where it may contribute to nutrient cycling and energy flow. The ecological importance of Flavobacterium crassostreae strain LPB0076 lies in its potential role in marine ecosystems, especially considering its association with oysters, as suggested by its species name. Given its aerobic nature, this bacterium may play a role in the decomposition processes within the aquatic microbiome, facilitating the breakdown of organic materials and influencing the overall health and sustainability of its habitat. Understanding the traits and behaviors of this strain could provide insights into the microbial dynamics in marine environments and their impact on oyster populations.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassFlavobacteriia
OrderFlavobacteriales
FamilyFlavobacteriaceae
GenusFlavobacterium
SpeciesFlavobacterium crassostreae
Strainstrain LPB0076 LPBF77

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
Mobilitynon-motile
Flagellar presenceYes
Number of membranesNot Available
Image of Flavobacterium crassostreae strain LPB0076 LPBF77
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperature25
Temperature rangemesophilic
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Flavobacterium crassostreae strain LPB0076 LPBF77, whole genome

Gene Summary

Adenine Count

886617 bp

Thymine Count

883625 bp

Guanine Count

489443 bp

Cytosine Count

503156 bp

Genome Length

2762845 bp

Protein-coding Genes

2426 genes

Non-Coding Genes

56 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
agmatine deiminaseLPBF_09495Not AvailablePositive2061674 - 206271439366.3
peptidase m1LPBF_09500Not AvailableNegative2062790 - 206506085290.8
aldose epimeraseLPBF_09505Not AvailablePositive2065234 - 206608832459.8
alanine acetyltransferaseLPBF_09510Not AvailablePositive2066105 - 206665620936.2
hypothetical proteinLPBF_09515Not AvailablePositive2066776 - 206732721408.6
transporterLPBF_09520Not AvailableNegative2067324 - 20675608894.77
ssra-binding proteinLPBF_09525Not AvailablePositive2067631 - 206808617585.4
protein-l-isoaspartate o-methyltransferaseLPBF_09530Not AvailableNegative2068195 - 206883623768.1
rna pseudouridine synthaseLPBF_09535Not AvailableNegative2069242 - 207028539349.2
pasta domain-containing proteinLPBF_09540Not AvailableNegative2070275 - 207089223058.9

Displaying genes 1881 – 1890 of 2482 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.