Rhodococcus sp. LB1

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Mycobacteriales

Family

Nocardiaceae

Genus

Rhodococcus

Description

Rhodococcus sp. LB1 is a noteworthy bacterial strain characterized by the presence of flagella, which contributes to its motility. This feature is significant in various ecological contexts, as motile bacteria can effectively navigate their environment, which may enhance their survival and adaptability. The strain possesses a single replicon, indicating that it has a streamlined genetic organization that may facilitate efficient replication and stability of its genetic material. This trait is often associated with the adaptability of bacteria to diverse environments, allowing for quicker responses to changes in their surroundings. Rhodococcus species are known for their metabolic versatility, which includes the ability to degrade complex organic compounds. While specific metabolic pathways for Rhodococcus sp. LB1 are not detailed here, the genus is generally associated with bioremediation processes, contributing to the breakdown of pollutants and organic contaminants in various ecosystems. The accession number for Rhodococcus sp. LB1 is LTCZ00000000.1, which serves as a reference for genetic and genomic studies. This unique identifier allows researchers to access genomic data for further investigation into the characteristics and potential applications of this strain. In summary, Rhodococcus sp. LB1, with its flagella presence and single replicon, illustrates important traits that may enhance its ecological role, particularly in environments where motility and metabolic versatility are advantageous for survival and degradation of organic matter.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderMycobacteriales
FamilyNocardiaceae
GenusRhodococcus
SpeciesRhodococcus sp. LB1
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Rhodococcus sp. LB1 contig_99, whole genome shotgun sequence.

Gene Summary

Adenine Count

1795853 bp

Thymine Count

1791733 bp

Guanine Count

3572979 bp

Cytosine Count

3587370 bp

Genome Length

10751952 bp

Protein-coding Genes

9170 genes

Non-Coding Genes

49 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
mycofactocin radical sam maturaseAZG88_15440A0QSB8Positive8328429 - 832964643790.0
alpha-hydroxy-acid oxidizing enzymeAZG88_15445P9WND6Positive8329676 - 833085741796.1
2,4-dienoyl-coa reductaseAZG88_15450A4J778Positive8330874 - 833283868926.1
nad-dependent oxidoreductaseAZG88_15455P9WGS6Positive8332847 - 833365928774.2
2,4-dienoyl-coa reductaseAZG88_15460Not AvailablePositive8333656 - 833561769957.6
mycofactocin system creatininase family proteinAZG88_15465A0QSC0Positive8335658 - 833638025095.9
mycofactocin system glycosyltransferaseAZG88_15470P46370Positive8336487 - 833788750218.2
choline dehydrogenaseAZG88_15475P46371Positive8337887 - 833935951927.6
transcriptional regulatorAZG88_15480Not AvailablePositive8339426 - 834074247291.2
aldehyde dehydrogenaseAZG88_15485P46369Positive8340818 - 834234155124.4

Displaying genes 7091 – 7100 of 9219 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

646 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000198tetracenomycin CC23H20O11Chemical structure of tetracenomycin CNot available
Average472.402Da
Monoisotopic472.100561464Da
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000232(4S)-perillyl alcoholC10H16OChemical structure of (4S)-perillyl alcoholNot available
Average152.237Da
Monoisotopic152.1201151Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm0000249(2E,4E)-2,4-dichloromuconateC6H2Cl2O4Chemical structure of (2E,4E)-2,4-dichloromuconateNot available
Average208.98Da
Monoisotopic207.9341111Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002543-hydroxy-2-methylpropanoateC4H7O3Chemical structure of 3-hydroxy-2-methylpropanoateNot available
Average103.098Da
Monoisotopic103.0400677Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm00002634-(hydroxymethyl)benzenesulfonateC7H7O4SChemical structure of 4-(hydroxymethyl)benzenesulfonateNot available
Average187.19Da
Monoisotopic187.007053459Da

Displaying 1–10 of 646 metabolites

Health Effects

No health effects information available for this bacterium.