Burkholderia vietnamiensis strain HI3392

Gram-negativeRodMotileFacultative aerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Burkholderiales

Family

Burkholderiaceae

Genus

Burkholderia

Description

Burkholderia vietnamiensis strain HI3392 is a Gram-negative, rod-shaped bacterium characterized as a facultative aerobe, indicating its capability to thrive in both aerobic and anaerobic environments. This strain is mesophilic, meaning it grows optimally at moderate temperatures, which is typical for many soil and plant-associated bacteria. Strain HI3392 has demonstrated mobility, allowing it to navigate its environment, which includes multiple habitats. It exists as a free-living organism, indicating its ability to survive independently without a host. Notably, this bacterium has been associated with Oryza sativa, commonly known as rice, including both the Indica and Japonica groups. This association highlights its potential role in rice cultivation, possibly influencing plant health or soil dynamics. Burkholderia vietnamiensis strain HI3392 is noted to have a single replicon and is surrounded by two membranes, which is characteristic of Gram-negative bacteria. The accession number for this strain is LPCS00000000.1, providing a reference for further scientific study. The ecological insight from this profile suggests that Burkholderia vietnamiensis strain HI3392 may play a significant role in rice agriculture, potentially affecting nutrient cycling or plant-microbe interactions in paddy fields. Its free-living nature and association with rice highlight its potential contributions to soil health and crop productivity. Understanding this bacterium's ecology could inform agricultural practices, particularly in rice-growing regions.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilyBurkholderiaceae
GenusBurkholderia
SpeciesBurkholderia vietnamiensis
Strainstrain HI3392

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceNot Available
Number of membranes2
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative aerobe
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipFree living
Host(s)Oryza sativa, Oryza sativa Indica Group, Oryza sativa Japonica Group
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Burkholderia vietnamiensis strain HI3392


Gene Summary

Adenine Count

1281297 bp

Thymine Count

1278521 bp

Guanine Count

2527611 bp

Cytosine Count

2531339 bp

Genome Length

7618768 bp

Protein-coding Genes

6503 genes

Non-Coding Genes

231 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
AttlNot AvailableNot AvailablePositive2548200 - 2548212Not Available
Transposase, putativeWK32_03300Not AvailableNegative2548251 - 254996964297.7
TransposaseWK32_03305P06694Positive2550134 - 2553100111349.0
Tail tape measure proteinWK32_03310Not AvailableNegative2553133 - 255423639342.0
Gp31, phage tail protein eWK32_03315O64313Negative2554392 - 255467610112.2
Gp32, phage major tail tube proteinWK32_03320Not AvailableNegative2554763 - 255527218462.9
Major tail sheath proteinWK32_03325Not AvailableNegative2555290 - 255646541910.8
Gp17WK32_03330Not AvailableNegative2556527 - 255715923141.0
Tail fiber proximal subunitWK32_03335Not AvailableNegative2557176 - 255874153729.0
Gp33, phage tail protein iWK32_03340Not AvailableNegative2558745 - 255928719807.8

Displaying genes 1 – 10 of 6734 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

385 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000173(R)-3-Hydroxybutyric acidC4H8O3Chemical structure of (R)-3-Hydroxybutyric acid625-72-3
Average104.0473Da
Monoisotopic104.047344122Da
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000234(3R)-hydroxybutanoate dimerC8H13O5Chemical structure of (3R)-hydroxybutanoate dimerNot available
Average189.188Da
Monoisotopic189.0768471Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm0000238(R)-3-phenyllactateC9H9O3Chemical structure of (R)-3-phenyllactateNot available
Average165.169Da
Monoisotopic165.05571773Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002543-hydroxy-2-methylpropanoateC4H7O3Chemical structure of 3-hydroxy-2-methylpropanoateNot available
Average103.098Da
Monoisotopic103.0400677Da
BASm00002583-(carbamoylamino)propanoateC4H7N2O3Chemical structure of 3-(carbamoylamino)propanoateNot available
Average131.112Da
Monoisotopic131.046215673Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da

Displaying 1–10 of 385 metabolites

Health Effects

No health effects information available for this bacterium.