Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Leifsonia
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Leifsonia |
| Species | Leifsonia xyli |
| Strain | subsp. xyli strain gdw1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Bacilli |
| Mobility | No |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | 20 |
| Temperature range | Mesophilic |
| Habitat | xylem |
| Biotic relationship | Free living |
| Host(s) | Oryza sativa, Zea mays subsp. mays, Cynodon dactylon |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
316022 bp
Thymine Count
319337 bp
Guanine Count
659667 bp
Cytosine Count
662381 bp
Genome Length
1957407 bp
Protein-coding Genes
1617 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | ATY41_11730 | Not Available | Negative | 1152350 - 1152673 | 13291.3 |
| ribonuclease hii | ATY41_11735 | Not Available | Negative | 1152686 - 1153366 | 24119.0 |
| 50s ribosomal protein l19 | ATY41_11740 | Not Available | Negative | 1153591 - 1153938 | 13087.0 |
| hypothetical protein | ATY41_11745 | Not Available | Negative | 1154132 - 1154626 | 17817.0 |
| methionine aminopeptidase | ATY41_11750 | Not Available | Positive | 1154741 - 1155505 | 26839.6 |
| trna (guanine-n1)-methyltransferase | ATY41_11755 | Not Available | Negative | 1155529 - 1156212 | 24596.3 |
| mfs transporter | ATY41_11760 | Not Available | Negative | 1156235 - 1157407 | 39235.9 |
| 16s rrna processing protein rimm | ATY41_11770 | Not Available | Negative | 1158186 - 1158839 | 23551.9 |
| hypothetical protein | ATY41_11775 | Not Available | Negative | 1158841 - 1159071 | 8191.96 |
| 30s ribosomal protein s16 | ATY41_11780 | Not Available | Negative | 1159076 - 1159537 | 16603.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Ratoon stunting disease | Causes | PMC2516522 |
| Ratoon-stunting disease | Causes | PMC2516522 |
