Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Leifsonia
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Leifsonia |
| Species | Leifsonia xyli |
| Strain | subsp. xyli strain gdw1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Bacilli |
| Mobility | No |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | 20 |
| Temperature range | Mesophilic |
| Habitat | xylem |
| Biotic relationship | Free living |
| Host(s) | Oryza sativa, Zea mays subsp. mays, Cynodon dactylon |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
316022 bp
Thymine Count
319337 bp
Guanine Count
659667 bp
Cytosine Count
662381 bp
Genome Length
1957407 bp
Protein-coding Genes
1617 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | ATY41_11680 | Not Available | Positive | 1137426 - 1139138 | 58565.9 |
| hypothetical protein | ATY41_11685 | Not Available | Positive | 1139328 - 1140077 | 26114.8 |
| rna polymerase subunit sigma-54 | ATY41_11690 | Not Available | Positive | 1140316 - 1141014 | 25796.6 |
| preprotein translocase subunit seca | ATY41_11695 | Not Available | Positive | 1141226 - 1144033 | 103969.0 |
| hypothetical protein | ATY41_11700 | Not Available | Positive | 1144157 - 1144597 | 15501.5 |
| mfs transporter | ATY41_11705 | Not Available | Negative | 1144829 - 1146265 | 51222.2 |
| hypothetical protein | ATY41_11710 | Not Available | Negative | 1147237 - 1148457 | 41689.6 |
| dna processing protein dpra | ATY41_11715 | Not Available | Negative | 1148611 - 1149846 | 42954.4 |
| mg chelatase-like protein | ATY41_11720 | Not Available | Negative | 1150313 - 1151848 | 52577.7 |
| hypothetical protein | ATY41_11725 | Not Available | Negative | 1151848 - 1152204 | 13139.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Ratoon stunting disease | Causes | PMC2516522 |
| Ratoon-stunting disease | Causes | PMC2516522 |
