Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Leifsonia
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Leifsonia |
| Species | Leifsonia xyli |
| Strain | subsp. xyli strain gdw1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Bacilli |
| Mobility | No |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | 20 |
| Temperature range | Mesophilic |
| Habitat | xylem |
| Biotic relationship | Free living |
| Host(s) | Oryza sativa, Zea mays subsp. mays, Cynodon dactylon |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
316022 bp
Thymine Count
319337 bp
Guanine Count
659667 bp
Cytosine Count
662381 bp
Genome Length
1957407 bp
Protein-coding Genes
1617 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| phosphoribosylaminoimidazole synthetase | ATY41_03370 | Not Available | Positive | 1123833 - 1124951 | 37507.7 |
| hypothetical protein | ATY41_03375 | Not Available | Negative | 1125192 - 1125413 | 8290.23 |
| hypothetical protein | ATY41_11630 | Not Available | Positive | 1127037 - 1128092 | 37887.0 |
| hypothetical protein | ATY41_11635 | Not Available | Negative | 1128312 - 1128761 | 16836.0 |
| alcohol dehydrogenase | ATY41_11640 | Not Available | Positive | 1128803 - 1129015 | 7797.42 |
| phosphoglucosamine mutase | ATY41_11645 | Not Available | Positive | 1129068 - 1130468 | 48699.6 |
| hypothetical protein | ATY41_11660 | Not Available | Negative | 1132950 - 1133588 | 22567.7 |
| hypothetical protein | ATY41_11665 | Not Available | Negative | 1133593 - 1135071 | 51292.6 |
| two-component system response regulator | ATY41_11670 | Not Available | Positive | 1135071 - 1135754 | 24921.4 |
| histidine kinase | ATY41_11675 | Not Available | Positive | 1135771 - 1137429 | 59635.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Ratoon stunting disease | Causes | PMC2516522 |
| Ratoon-stunting disease | Causes | PMC2516522 |
