Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Leifsonia
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Leifsonia |
| Species | Leifsonia xyli |
| Strain | subsp. xyli strain gdw1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Bacilli |
| Mobility | No |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | 20 |
| Temperature range | Mesophilic |
| Habitat | xylem |
| Biotic relationship | Free living |
| Host(s) | Oryza sativa, Zea mays subsp. mays, Cynodon dactylon |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
316022 bp
Thymine Count
319337 bp
Guanine Count
659667 bp
Cytosine Count
662381 bp
Genome Length
1957407 bp
Protein-coding Genes
1617 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | ATY41_03320 | Not Available | Positive | 1113877 - 1114416 | 18656.5 |
| hypothetical protein | ATY41_03325 | Not Available | Positive | 1114592 - 1115329 | 25662.6 |
| hypothetical protein | ATY41_03330 | Not Available | Negative | 1115339 - 1116247 | 32758.9 |
| transcriptional regulator | ATY41_03335 | Not Available | Positive | 1116458 - 1117042 | 21541.1 |
| multidrug mfs transporter | ATY41_03340 | Not Available | Positive | 1117072 - 1118610 | 53592.6 |
| phosphoribosylaminoimidazolesuccinocarboxamide synthase | ATY41_03345 | Not Available | Negative | 1118700 - 1119590 | 32584.4 |
| phosphoribosylamine--glycine ligase | ATY41_03350 | Not Available | Negative | 1119695 - 1120948 | 43137.6 |
| hypothetical protein | ATY41_03355 | Not Available | Positive | 1121006 - 1121362 | 12085.5 |
| hypothetical protein | ATY41_03360 | Not Available | Positive | 1121385 - 1121816 | 14985.7 |
| amidophosphoribosyltransferase | ATY41_03365 | Not Available | Positive | 1121838 - 1123397 | 55428.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Ratoon stunting disease | Causes | PMC2516522 |
| Ratoon-stunting disease | Causes | PMC2516522 |
