Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Leifsonia
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Leifsonia |
| Species | Leifsonia xyli |
| Strain | subsp. xyli strain gdw1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Bacilli |
| Mobility | No |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | 20 |
| Temperature range | Mesophilic |
| Habitat | xylem |
| Biotic relationship | Free living |
| Host(s) | Oryza sativa, Zea mays subsp. mays, Cynodon dactylon |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
316022 bp
Thymine Count
319337 bp
Guanine Count
659667 bp
Cytosine Count
662381 bp
Genome Length
1957407 bp
Protein-coding Genes
1617 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| phosphoribosylformylglycinamidine synthase | ATY41_03265 | Not Available | Negative | 1104087 - 1104785 | 24665.6 |
| phosphoribosylformylglycinamidine synthase | ATY41_03270 | Not Available | Negative | 1104785 - 1105018 | 8067.48 |
| haloacid dehalogenase | ATY41_03280 | Not Available | Positive | 1106698 - 1107414 | 24477.7 |
| alcohol dehydrogenase | ATY41_03285 | Not Available | Positive | 1107411 - 1108508 | 37471.2 |
| hypothetical protein | ATY41_03290 | Not Available | Positive | 1108661 - 1109050 | 13697.5 |
| hypothetical protein | ATY41_03295 | Not Available | Negative | 1109174 - 1109485 | 10873.3 |
| hypothetical protein | ATY41_03300 | Not Available | Negative | 1109482 - 1109772 | 10055.9 |
| hypothetical protein | ATY41_03305 | Not Available | Negative | 1109769 - 1110293 | 18935.3 |
| hypothetical protein | ATY41_03310 | Not Available | Negative | 1110305 - 1110598 | 10658.5 |
| hypothetical protein | ATY41_03315 | Not Available | Positive | 1111220 - 1113880 | 94928.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Ratoon stunting disease | Causes | PMC2516522 |
| Ratoon-stunting disease | Causes | PMC2516522 |
