Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Leifsonia
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Leifsonia |
| Species | Leifsonia xyli |
| Strain | subsp. xyli strain gdw1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Bacilli |
| Mobility | No |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | 20 |
| Temperature range | Mesophilic |
| Habitat | xylem |
| Biotic relationship | Free living |
| Host(s) | Oryza sativa, Zea mays subsp. mays, Cynodon dactylon |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
316022 bp
Thymine Count
319337 bp
Guanine Count
659667 bp
Cytosine Count
662381 bp
Genome Length
1957407 bp
Protein-coding Genes
1617 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| phosphoribosylglycinamide synthetase | ATY41_03195 | Not Available | Negative | 1089685 - 1092003 | 81587.5 |
| hypothetical protein | ATY41_03200 | Not Available | Negative | 1092061 - 1092327 | 9136.58 |
| hypothetical protein | ATY41_03205 | Not Available | Negative | 1092324 - 1092950 | 21700.9 |
| hypothetical protein | ATY41_03210 | Not Available | Positive | 1093046 - 1093270 | 8019.35 |
| hypothetical protein | ATY41_03215 | Not Available | Positive | 1093267 - 1093698 | 14260.1 |
| peptide abc transporter permease | ATY41_03225 | Not Available | Negative | 1095306 - 1096232 | 32210.7 |
| abc transporter substrate-binding protein | ATY41_03235 | Not Available | Negative | 1097110 - 1098786 | 61371.2 |
| laci family transcriptional regulator | ATY41_03240 | Not Available | Negative | 1098840 - 1099874 | 36247.3 |
| hypothetical protein | ATY41_03255 | Not Available | Negative | 1102650 - 1103195 | 18174.4 |
| hypothetical protein | ATY41_03260 | Not Available | Negative | 1103276 - 1103734 | 16689.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Ratoon stunting disease | Causes | PMC2516522 |
| Ratoon-stunting disease | Causes | PMC2516522 |
