Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Leifsonia
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Leifsonia |
| Species | Leifsonia xyli |
| Strain | subsp. xyli strain gdw1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Bacilli |
| Mobility | No |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | 20 |
| Temperature range | Mesophilic |
| Habitat | xylem |
| Biotic relationship | Free living |
| Host(s) | Oryza sativa, Zea mays subsp. mays, Cynodon dactylon |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
316022 bp
Thymine Count
319337 bp
Guanine Count
659667 bp
Cytosine Count
662381 bp
Genome Length
1957407 bp
Protein-coding Genes
1617 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| permease | ATY41_03140 | Not Available | Positive | 1080467 - 1081798 | 45709.4 |
| chorismate mutase | ATY41_03145 | Not Available | Positive | 1081816 - 1082130 | 11704.9 |
| hypothetical protein | ATY41_03150 | Not Available | Negative | 1082528 - 1082824 | 10451.4 |
| hypothetical protein | ATY41_03155 | Not Available | Negative | 1082909 - 1083103 | 7177.74 |
| glucosaminyltransferase | ATY41_03160 | Not Available | Negative | 1083136 - 1084401 | 46487.9 |
| 5,10-methylene tetrahydromethanopterin reductase | ATY41_03170 | Not Available | Negative | 1085137 - 1086333 | 44252.0 |
| hypothetical protein | ATY41_03175 | Not Available | Positive | 1086549 - 1087754 | 43068.4 |
| hypothetical protein | ATY41_03180 | Not Available | Positive | 1087997 - 1088431 | 14643.4 |
| hypothetical protein | ATY41_03185 | Not Available | Positive | 1088474 - 1088689 | 7544.94 |
| hypothetical protein | ATY41_03190 | Not Available | Positive | 1088753 - 1089661 | 32261.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Ratoon stunting disease | Causes | PMC2516522 |
| Ratoon-stunting disease | Causes | PMC2516522 |
