Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Leifsonia
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Leifsonia |
| Species | Leifsonia xyli |
| Strain | subsp. xyli strain gdw1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Bacilli |
| Mobility | No |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | 20 |
| Temperature range | Mesophilic |
| Habitat | xylem |
| Biotic relationship | Free living |
| Host(s) | Oryza sativa, Zea mays subsp. mays, Cynodon dactylon |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
316022 bp
Thymine Count
319337 bp
Guanine Count
659667 bp
Cytosine Count
662381 bp
Genome Length
1957407 bp
Protein-coding Genes
1617 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| laci family transcriptional regulator | ATY41_03005 | Not Available | Negative | 1051984 - 1053015 | 36422.7 |
| sugar abc transporter substrate-binding protein | ATY41_03010 | Not Available | Positive | 1053153 - 1054460 | 46198.5 |
| hypothetical protein | ATY41_03025 | Not Available | Positive | 1056681 - 1057346 | 22832.6 |
| glycosyl hydrolase | ATY41_03040 | Not Available | Positive | 1059868 - 1061133 | 46194.3 |
| hypothetical protein | ATY41_03045 | Not Available | Positive | 1061349 - 1062431 | 39328.7 |
| hypothetical protein | ATY41_03050 | Not Available | Positive | 1062398 - 1062736 | 12154.2 |
| abc transporter permease | ATY41_03055 | Not Available | Positive | 1062793 - 1063710 | 32224.6 |
| hypothetical protein | ATY41_03060 | Not Available | Positive | 1063707 - 1065116 | 51525.7 |
| hypothetical protein | ATY41_03065 | Not Available | Positive | 1065100 - 1065345 | 8945.54 |
| exonuclease | ATY41_03075 | Not Available | Negative | 1066872 - 1067714 | 31245.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Ratoon stunting disease | Causes | PMC2516522 |
| Ratoon-stunting disease | Causes | PMC2516522 |
