Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Leifsonia
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Leifsonia |
| Species | Leifsonia xyli |
| Strain | subsp. xyli strain gdw1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Bacilli |
| Mobility | No |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | 20 |
| Temperature range | Mesophilic |
| Habitat | xylem |
| Biotic relationship | Free living |
| Host(s) | Oryza sativa, Zea mays subsp. mays, Cynodon dactylon |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
316022 bp
Thymine Count
319337 bp
Guanine Count
659667 bp
Cytosine Count
662381 bp
Genome Length
1957407 bp
Protein-coding Genes
1617 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| sam-dependent methyltransferase | ATY41_02940 | Not Available | Positive | 1037501 - 1038685 | 41035.1 |
| hypothetical protein | ATY41_02945 | Not Available | Positive | 1038696 - 1039313 | 21130.1 |
| hypothetical protein | ATY41_02950 | Not Available | Positive | 1039407 - 1040138 | 24479.0 |
| transporter | ATY41_02955 | Not Available | Positive | 1040135 - 1040803 | 21803.5 |
| hypothetical protein | ATY41_02960 | Not Available | Positive | 1040800 - 1042839 | 72083.0 |
| hypothetical protein | ATY41_02970 | Not Available | Negative | 1044701 - 1045111 | 14938.5 |
| hypothetical protein | ATY41_02975 | Not Available | Positive | 1045961 - 1046425 | 15472.2 |
| hypothetical protein | ATY41_02985 | Not Available | Negative | 1048633 - 1049091 | 16405.4 |
| hypothetical protein | ATY41_02990 | Not Available | Positive | 1049321 - 1049968 | 24071.9 |
| imp dehydrogenase | ATY41_02995 | Not Available | Positive | 1049979 - 1051028 | 36347.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Ratoon stunting disease | Causes | PMC2516522 |
| Ratoon-stunting disease | Causes | PMC2516522 |
