Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Leifsonia
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Leifsonia |
| Species | Leifsonia xyli |
| Strain | subsp. xyli strain gdw1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Bacilli |
| Mobility | No |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | 20 |
| Temperature range | Mesophilic |
| Habitat | xylem |
| Biotic relationship | Free living |
| Host(s) | Oryza sativa, Zea mays subsp. mays, Cynodon dactylon |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
316022 bp
Thymine Count
319337 bp
Guanine Count
659667 bp
Cytosine Count
662381 bp
Genome Length
1957407 bp
Protein-coding Genes
1617 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| deoxycytidine triphosphate deaminase | ATY41_02880 | Not Available | Positive | 1027734 - 1028339 | 22158.3 |
| isopentenyl-diphosphate delta-isomerase | ATY41_02890 | Not Available | Negative | 1029019 - 1029576 | 19943.5 |
| gtp pyrophosphokinase | ATY41_02895 | Not Available | Negative | 1029766 - 1030488 | 26898.2 |
| hypothetical protein | ATY41_02900 | Not Available | Negative | 1030532 - 1030741 | 7466.85 |
| molecular chaperone dnak | ATY41_02905 | Not Available | Positive | 1031021 - 1032895 | 67363.9 |
| molecular chaperone grpe | ATY41_02910 | Not Available | Positive | 1032892 - 1033560 | 24108.9 |
| molecular chaperone dnaj | ATY41_02915 | Not Available | Positive | 1033673 - 1034659 | 34509.7 |
| transcriptional regulator | ATY41_02920 | Not Available | Positive | 1034670 - 1035083 | 15355.6 |
| hypothetical protein | ATY41_02930 | Not Available | Positive | 1036859 - 1037257 | 14777.0 |
| hypothetical protein | ATY41_02935 | Not Available | Positive | 1037295 - 1037504 | 7414.72 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Ratoon stunting disease | Causes | PMC2516522 |
| Ratoon-stunting disease | Causes | PMC2516522 |
