Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Leifsonia
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Leifsonia |
| Species | Leifsonia xyli |
| Strain | subsp. xyli strain gdw1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Bacilli |
| Mobility | No |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | 20 |
| Temperature range | Mesophilic |
| Habitat | xylem |
| Biotic relationship | Free living |
| Host(s) | Oryza sativa, Zea mays subsp. mays, Cynodon dactylon |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
316022 bp
Thymine Count
319337 bp
Guanine Count
659667 bp
Cytosine Count
662381 bp
Genome Length
1957407 bp
Protein-coding Genes
1617 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | ATY41_02620 | Not Available | Negative | 981887 - 982504 | 22448.1 |
| hypothetical protein | ATY41_02625 | Not Available | Negative | 982916 - 983500 | 21517.4 |
| xre family transcriptional regulator | ATY41_02630 | Not Available | Negative | 983524 - 983868 | 12509.1 |
| hypothetical protein | ATY41_02640 | Not Available | Negative | 985088 - 985369 | 9087.6 |
| hypothetical protein | ATY41_02645 | Not Available | Negative | 985631 - 987274 | 54698.5 |
| gntr family transcriptional regulator | ATY41_02650 | Not Available | Negative | 987905 - 988663 | 28150.8 |
| hypothetical protein | ATY41_02655 | Not Available | Positive | 989535 - 989792 | 8809.71 |
| hypothetical protein | ATY41_02660 | Not Available | Positive | 990912 - 991931 | 37378.6 |
| hypothetical protein | ATY41_02665 | Not Available | Negative | 994447 - 994959 | 18900.3 |
| hypothetical protein | ATY41_02670 | Not Available | Negative | 995195 - 995401 | 7072.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Ratoon stunting disease | Causes | PMC2516522 |
| Ratoon-stunting disease | Causes | PMC2516522 |
