Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Leifsonia
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Leifsonia |
| Species | Leifsonia xyli |
| Strain | subsp. xyli strain gdw1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Bacilli |
| Mobility | No |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | 20 |
| Temperature range | Mesophilic |
| Habitat | xylem |
| Biotic relationship | Free living |
| Host(s) | Oryza sativa, Zea mays subsp. mays, Cynodon dactylon |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
316022 bp
Thymine Count
319337 bp
Guanine Count
659667 bp
Cytosine Count
662381 bp
Genome Length
1957407 bp
Protein-coding Genes
1617 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | ATY41_02550 | Not Available | Negative | 965343 - 965897 | 18355.3 |
| cation transporter | ATY41_02555 | Not Available | Negative | 966066 - 967004 | 33219.3 |
| cold-shock protein | ATY41_02560 | Not Available | Positive | 967201 - 967404 | 7523.85 |
| hypothetical protein | ATY41_02565 | Not Available | Negative | 968936 - 969190 | 9477.39 |
| hypothetical protein | ATY41_02570 | Not Available | Negative | 969509 - 970141 | 21690.8 |
| aldolase | ATY41_02580 | Not Available | Positive | 971301 - 972221 | 31976.6 |
| 2-keto-myo-inositol dehydratase | ATY41_02600 | Not Available | Positive | 976672 - 977589 | 33997.0 |
| inositol 2-dehydrogenase | ATY41_02605 | Not Available | Positive | 977632 - 978651 | 36425.4 |
| hypothetical protein | ATY41_02610 | Not Available | Positive | 979028 - 979411 | 12842.9 |
| hypothetical protein | ATY41_02615 | Not Available | Positive | 980714 - 981064 | 11334.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Ratoon stunting disease | Causes | PMC2516522 |
| Ratoon-stunting disease | Causes | PMC2516522 |
