Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Leifsonia
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Leifsonia |
| Species | Leifsonia xyli |
| Strain | subsp. xyli strain gdw1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Bacilli |
| Mobility | No |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | 20 |
| Temperature range | Mesophilic |
| Habitat | xylem |
| Biotic relationship | Free living |
| Host(s) | Oryza sativa, Zea mays subsp. mays, Cynodon dactylon |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
316022 bp
Thymine Count
319337 bp
Guanine Count
659667 bp
Cytosine Count
662381 bp
Genome Length
1957407 bp
Protein-coding Genes
1617 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| nad(p) transhydrogenase subunit beta | ATY41_11610 | Not Available | Negative | 953338 - 954756 | 47942.3 |
| nad(p) transhydrogenase subunit alpha | ATY41_11615 | Not Available | Negative | 954756 - 955064 | 10559.0 |
| hypothetical protein | ATY41_11620 | Not Available | Negative | 955061 - 956218 | 39614.4 |
| hypothetical protein | ATY41_11625 | Not Available | Negative | 956215 - 956943 | 26244.3 |
| ntp pyrophosphohydrolase | ATY41_02510 | Not Available | Positive | 958193 - 958597 | 14476.3 |
| rnd transporter | ATY41_02520 | Not Available | Positive | 959247 - 961715 | 84871.1 |
| hypothetical protein | ATY41_02525 | Not Available | Positive | 961965 - 962264 | 10446.3 |
| hypothetical protein | ATY41_02530 | Not Available | Positive | 962460 - 962831 | 12141.2 |
| hypothetical protein | ATY41_02540 | Not Available | Positive | 964266 - 964751 | 17686.1 |
| hypothetical protein | ATY41_02545 | Not Available | Positive | 964898 - 965338 | 16464.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Ratoon stunting disease | Causes | PMC2516522 |
| Ratoon-stunting disease | Causes | PMC2516522 |
