Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Leifsonia
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Leifsonia |
| Species | Leifsonia xyli |
| Strain | subsp. xyli strain gdw1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Bacilli |
| Mobility | No |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | 20 |
| Temperature range | Mesophilic |
| Habitat | xylem |
| Biotic relationship | Free living |
| Host(s) | Oryza sativa, Zea mays subsp. mays, Cynodon dactylon |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
316022 bp
Thymine Count
319337 bp
Guanine Count
659667 bp
Cytosine Count
662381 bp
Genome Length
1957407 bp
Protein-coding Genes
1617 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| heat-shock protein hsp20 | ATY41_11545 | Not Available | Negative | 937655 - 938077 | 15538.4 |
| aaa family atpase | ATY41_11550 | Not Available | Negative | 938552 - 939361 | 30000.9 |
| antitoxin | ATY41_11560 | Not Available | Positive | 941185 - 941460 | 10158.9 |
| addiction module toxin rele | ATY41_11565 | Not Available | Positive | 941457 - 941723 | 10060.2 |
| transposase | ATY41_11570 | Not Available | Negative | 944728 - 945168 | 16316.2 |
| hypothetical protein | ATY41_11580 | Not Available | Positive | 946470 - 947372 | 30949.4 |
| hypothetical protein | ATY41_11590 | Not Available | Negative | 948765 - 949253 | 18030.3 |
| alcohol dehydrogenase | ATY41_11595 | Not Available | Negative | 949255 - 950283 | 35603.8 |
| aldehyde dehydrogenase | ATY41_11600 | Not Available | Negative | 950322 - 951851 | 55031.3 |
| transposase | ATY41_11605 | Not Available | Positive | 952086 - 953288 | 43950.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Ratoon stunting disease | Causes | PMC2516522 |
| Ratoon-stunting disease | Causes | PMC2516522 |
