Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Leifsonia
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Leifsonia |
| Species | Leifsonia xyli |
| Strain | subsp. xyli strain gdw1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Bacilli |
| Mobility | No |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | 20 |
| Temperature range | Mesophilic |
| Habitat | xylem |
| Biotic relationship | Free living |
| Host(s) | Oryza sativa, Zea mays subsp. mays, Cynodon dactylon |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
316022 bp
Thymine Count
319337 bp
Guanine Count
659667 bp
Cytosine Count
662381 bp
Genome Length
1957407 bp
Protein-coding Genes
1617 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | ATY41_11485 | Not Available | Negative | 927003 - 927557 | 19157.1 |
| 3-methyl-2-oxobutanoate hydroxymethyltransferase | ATY41_11490 | Not Available | Negative | 927620 - 928471 | 30292.8 |
| glutamine synthetase | ATY41_11495 | Not Available | Positive | 928519 - 929856 | 49431.3 |
| glutamine-synthetase adenylyltransferase | ATY41_11500 | Not Available | Positive | 929896 - 932919 | 110046.0 |
| hypothetical protein | ATY41_11515 | Not Available | Negative | 934675 - 934890 | 7945.54 |
| hypothetical protein | ATY41_11520 | Not Available | Negative | 935256 - 935519 | 9520.58 |
| hypothetical protein | ATY41_11525 | Not Available | Negative | 935523 - 935873 | 12552.9 |
| hypothetical protein | ATY41_11530 | Not Available | Negative | 935860 - 936108 | 9369.0 |
| hypothetical protein | ATY41_11535 | Not Available | Positive | 936491 - 936715 | 7652.01 |
| hypothetical protein | ATY41_11540 | Not Available | Positive | 936712 - 937383 | 25837.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Ratoon stunting disease | Causes | PMC2516522 |
| Ratoon-stunting disease | Causes | PMC2516522 |
