Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Leifsonia
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Leifsonia |
| Species | Leifsonia xyli |
| Strain | subsp. xyli strain gdw1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Bacilli |
| Mobility | No |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | 20 |
| Temperature range | Mesophilic |
| Habitat | xylem |
| Biotic relationship | Free living |
| Host(s) | Oryza sativa, Zea mays subsp. mays, Cynodon dactylon |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
316022 bp
Thymine Count
319337 bp
Guanine Count
659667 bp
Cytosine Count
662381 bp
Genome Length
1957407 bp
Protein-coding Genes
1617 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| threonine synthase | ATY41_08295 | Not Available | Positive | 79553 - 80665 | 38326.5 |
| homoserine kinase | ATY41_08300 | Not Available | Positive | 80665 - 81636 | 33324.3 |
| transcription termination factor rho | ATY41_08305 | Not Available | Positive | 81896 - 83983 | 74430.5 |
| peptide chain release factor 1 | ATY41_08310 | Not Available | Positive | 84070 - 85146 | 39747.4 |
| serine acetyltransferase | ATY41_08315 | Not Available | Negative | 85313 - 85882 | 20314.6 |
| protein-(glutamine-n5) methyltransferase, release factor-specific | ATY41_08325 | Not Available | Positive | 86830 - 87708 | 30946.8 |
| hydrolase | ATY41_08330 | Not Available | Negative | 87727 - 88359 | 22789.8 |
| translation factor sua5 | ATY41_08335 | Not Available | Positive | 88438 - 89136 | 23564.2 |
| udp-n-acetylmuramyl pentapeptide phosphotransferase | ATY41_08340 | Not Available | Positive | 89141 - 90409 | 45211.4 |
| hypothetical protein | ATY41_08345 | Not Available | Positive | 90406 - 90912 | 17668.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Ratoon stunting disease | Causes | PMC2516522 |
| Ratoon-stunting disease | Causes | PMC2516522 |
