Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Leifsonia
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Leifsonia |
| Species | Leifsonia xyli |
| Strain | subsp. xyli strain gdw1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Bacilli |
| Mobility | No |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | 20 |
| Temperature range | Mesophilic |
| Habitat | xylem |
| Biotic relationship | Free living |
| Host(s) | Oryza sativa, Zea mays subsp. mays, Cynodon dactylon |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
316022 bp
Thymine Count
319337 bp
Guanine Count
659667 bp
Cytosine Count
662381 bp
Genome Length
1957407 bp
Protein-coding Genes
1617 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| pts enzyme i | ATY41_11435 | Not Available | Positive | 918592 - 919299 | 23387.5 |
| aminotransferase | ATY41_11440 | Not Available | Negative | 919466 - 920755 | 45845.6 |
| hypothetical protein | ATY41_11445 | Not Available | Positive | 920817 - 921461 | 23475.9 |
| dihydrofolate reductase | ATY41_11450 | Not Available | Negative | 921454 - 921933 | 17657.2 |
| thymidylate synthase | ATY41_11455 | Not Available | Negative | 921930 - 922739 | 30673.2 |
| nif3-like dinuclear metal center hexameric protein | ATY41_11460 | Not Available | Positive | 922865 - 923692 | 28070.8 |
| hypothetical protein | ATY41_11465 | Not Available | Positive | 923721 - 924455 | 26528.3 |
| polyphosphate glucokinase | ATY41_11470 | Not Available | Negative | 924956 - 925708 | 26400.5 |
| methionine aminopeptidase | ATY41_11475 | Not Available | Negative | 925802 - 926668 | 31143.5 |
| methionine aminopeptidase | ATY41_11480 | Not Available | Positive | 926681 - 926893 | 8032.95 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Ratoon stunting disease | Causes | PMC2516522 |
| Ratoon-stunting disease | Causes | PMC2516522 |
