Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Leifsonia
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Leifsonia |
| Species | Leifsonia xyli |
| Strain | subsp. xyli strain gdw1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Bacilli |
| Mobility | No |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | 20 |
| Temperature range | Mesophilic |
| Habitat | xylem |
| Biotic relationship | Free living |
| Host(s) | Oryza sativa, Zea mays subsp. mays, Cynodon dactylon |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
316022 bp
Thymine Count
319337 bp
Guanine Count
659667 bp
Cytosine Count
662381 bp
Genome Length
1957407 bp
Protein-coding Genes
1617 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| phenylalanine--trna ligase subunit alpha | ATY41_11385 | Not Available | Negative | 908482 - 909522 | 37472.3 |
| rna methyltransferase | ATY41_11390 | Not Available | Negative | 909604 - 910410 | 28035.5 |
| hypothetical protein | ATY41_11395 | Not Available | Positive | 910553 - 911041 | 17029.4 |
| ubiquinol-cytochrome c reductase cytochrome b subunit | ATY41_11400 | Not Available | Negative | 911468 - 913087 | 59607.0 |
| ubiquinol-cytochrome c reductase | ATY41_11405 | Not Available | Negative | 913084 - 914157 | 39204.7 |
| cystathionine beta-lyase | ATY41_11410 | Not Available | Negative | 914206 - 915048 | 29224.8 |
| cytochrome b | ATY41_11415 | Not Available | Negative | 915072 - 915647 | 20858.4 |
| anthranilate phosphoribosyltransferase | ATY41_11420 | Not Available | Positive | 915849 - 916898 | 36115.0 |
| dihydroxyacetone kinase | ATY41_11425 | Not Available | Positive | 916940 - 917929 | 34537.3 |
| dihydroxyacetone kinase | ATY41_11430 | Not Available | Positive | 917960 - 918592 | 21285.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Ratoon stunting disease | Causes | PMC2516522 |
| Ratoon-stunting disease | Causes | PMC2516522 |
