Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Leifsonia
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Leifsonia |
| Species | Leifsonia xyli |
| Strain | subsp. xyli strain gdw1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Bacilli |
| Mobility | No |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | 20 |
| Temperature range | Mesophilic |
| Habitat | xylem |
| Biotic relationship | Free living |
| Host(s) | Oryza sativa, Zea mays subsp. mays, Cynodon dactylon |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
316022 bp
Thymine Count
319337 bp
Guanine Count
659667 bp
Cytosine Count
662381 bp
Genome Length
1957407 bp
Protein-coding Genes
1617 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| acetylornithine aminotransferase | ATY41_11335 | Not Available | Negative | 898594 - 899805 | 42335.8 |
| acetylglutamate kinase | ATY41_11340 | Not Available | Negative | 899802 - 900710 | 31813.5 |
| n-acetylglutamate synthase | ATY41_11345 | Not Available | Negative | 900712 - 901866 | 38947.6 |
| n-acetyl-gamma-glutamyl-phosphate reductase | ATY41_11350 | Not Available | Negative | 901863 - 902906 | 35149.9 |
| hypothetical protein | ATY41_11355 | Not Available | Positive | 902919 - 903137 | 7956.18 |
| hypothetical protein | ATY41_11360 | Not Available | Positive | 903186 - 903452 | 8746.62 |
| hypothetical protein | ATY41_11365 | Not Available | Positive | 903461 - 904867 | 48759.4 |
| hypothetical protein | ATY41_11370 | Not Available | Negative | 904856 - 905083 | 8056.66 |
| hypothetical protein | ATY41_11375 | Not Available | Positive | 905361 - 905930 | 20808.6 |
| phenylalanine--trna ligase subunit beta | ATY41_11380 | Not Available | Negative | 905939 - 908482 | 87662.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Ratoon stunting disease | Causes | PMC2516522 |
| Ratoon-stunting disease | Causes | PMC2516522 |
