Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Leifsonia
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Leifsonia |
| Species | Leifsonia xyli |
| Strain | subsp. xyli strain gdw1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Bacilli |
| Mobility | No |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | 20 |
| Temperature range | Mesophilic |
| Habitat | xylem |
| Biotic relationship | Free living |
| Host(s) | Oryza sativa, Zea mays subsp. mays, Cynodon dactylon |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
316022 bp
Thymine Count
319337 bp
Guanine Count
659667 bp
Cytosine Count
662381 bp
Genome Length
1957407 bp
Protein-coding Genes
1617 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | ATY41_11280 | Not Available | Positive | 888925 - 889797 | 30270.6 |
| hypothetical protein | ATY41_11285 | Not Available | Positive | 889806 - 890153 | 12020.7 |
| hemolysin | ATY41_11290 | Not Available | Negative | 890170 - 890955 | 27243.1 |
| hypothetical protein | ATY41_11295 | Not Available | Negative | 890995 - 892050 | 38151.6 |
| hypothetical protein | ATY41_11300 | Not Available | Negative | 892093 - 892278 | 6418.32 |
| tyrosine--trna ligase | ATY41_11305 | Not Available | Negative | 892280 - 893608 | 47745.5 |
| dna-binding protein | ATY41_11310 | Not Available | Positive | 893740 - 894369 | 22029.1 |
| 3-methyladenine dna glycosylase | ATY41_11320 | Not Available | Negative | 895433 - 896062 | 21823.1 |
| argininosuccinate lyase | ATY41_11325 | Not Available | Negative | 896174 - 897637 | 51582.1 |
| ornithine carbamoyltransferase | ATY41_11330 | Not Available | Negative | 897634 - 898572 | 33313.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Ratoon stunting disease | Causes | PMC2516522 |
| Ratoon-stunting disease | Causes | PMC2516522 |
