Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Leifsonia
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Leifsonia |
| Species | Leifsonia xyli |
| Strain | subsp. xyli strain gdw1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Bacilli |
| Mobility | No |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | 20 |
| Temperature range | Mesophilic |
| Habitat | xylem |
| Biotic relationship | Free living |
| Host(s) | Oryza sativa, Zea mays subsp. mays, Cynodon dactylon |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
316022 bp
Thymine Count
319337 bp
Guanine Count
659667 bp
Cytosine Count
662381 bp
Genome Length
1957407 bp
Protein-coding Genes
1617 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| haloacid dehalogenase | ATY41_11120 | Not Available | Negative | 852878 - 853690 | 29743.2 |
| serine--trna ligase | ATY41_11125 | Not Available | Negative | 853687 - 854952 | 46166.1 |
| hypothetical protein | ATY41_11130 | Not Available | Positive | 854989 - 855288 | 10414.4 |
| prephenate dehydratase | ATY41_11135 | Not Available | Negative | 855236 - 856219 | 34265.5 |
| phosphoglucomutase | ATY41_11140 | Not Available | Positive | 856289 - 857938 | 58704.8 |
| transposase | ATY41_11145 | Not Available | Positive | 857985 - 858380 | 15041.2 |
| transposase | ATY41_11150 | Not Available | Positive | 858596 - 858874 | 10639.8 |
| hypothetical protein | ATY41_11160 | Not Available | Negative | 859704 - 860597 | 31709.2 |
| hypothetical protein | ATY41_11165 | Not Available | Positive | 860981 - 861946 | 34840.1 |
| hypothetical protein | ATY41_11170 | Not Available | Negative | 861943 - 862659 | 24567.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Ratoon stunting disease | Causes | PMC2516522 |
| Ratoon-stunting disease | Causes | PMC2516522 |
