Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Leifsonia
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Leifsonia |
| Species | Leifsonia xyli |
| Strain | subsp. xyli strain gdw1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Bacilli |
| Mobility | No |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | 20 |
| Temperature range | Mesophilic |
| Habitat | xylem |
| Biotic relationship | Free living |
| Host(s) | Oryza sativa, Zea mays subsp. mays, Cynodon dactylon |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
316022 bp
Thymine Count
319337 bp
Guanine Count
659667 bp
Cytosine Count
662381 bp
Genome Length
1957407 bp
Protein-coding Genes
1617 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 16s rrna (guanine(966)-n(2))-methyltransferase rsmd | ATY41_10985 | Not Available | Negative | 824497 - 825069 | 19645.3 |
| atp-dependent dna helicase recg | ATY41_10990 | Not Available | Positive | 825147 - 827366 | 78450.1 |
| phosphopantetheine adenylyltransferase | ATY41_10995 | Not Available | Positive | 827453 - 827932 | 16945.4 |
| hypothetical protein | ATY41_11000 | Not Available | Positive | 828138 - 828722 | 21332.9 |
| 50s ribosomal protein l32 | ATY41_11005 | Not Available | Positive | 828725 - 828928 | 7507.06 |
| ribonuclease iii | ATY41_11010 | Not Available | Positive | 828940 - 829653 | 24822.3 |
| formamidopyrimidine-dna glycosylase | ATY41_11015 | Not Available | Positive | 829631 - 830524 | 32478.2 |
| hypothetical protein | ATY41_11020 | Not Available | Negative | 830551 - 831027 | 17746.3 |
| hypothetical protein | ATY41_11025 | Not Available | Positive | 831216 - 831527 | 11354.8 |
| csbd-like protein | ATY41_11050 | Not Available | Negative | 835111 - 835284 | 6076.17 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Ratoon stunting disease | Causes | PMC2516522 |
| Ratoon-stunting disease | Causes | PMC2516522 |
