Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Leifsonia
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Leifsonia |
| Species | Leifsonia xyli |
| Strain | subsp. xyli strain gdw1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Bacilli |
| Mobility | No |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | 20 |
| Temperature range | Mesophilic |
| Habitat | xylem |
| Biotic relationship | Free living |
| Host(s) | Oryza sativa, Zea mays subsp. mays, Cynodon dactylon |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
316022 bp
Thymine Count
319337 bp
Guanine Count
659667 bp
Cytosine Count
662381 bp
Genome Length
1957407 bp
Protein-coding Genes
1617 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | ATY41_10930 | Not Available | Positive | 813163 - 814329 | 41389.1 |
| tellurium resistance protein terc | ATY41_10935 | Not Available | Positive | 814628 - 815671 | 38578.9 |
| 3-isopropylmalate dehydratase | ATY41_10945 | Not Available | Positive | 816603 - 818063 | 52039.8 |
| isopropylmalate isomerase | ATY41_10950 | Not Available | Positive | 818063 - 818662 | 22251.4 |
| udp-n-acetylglucosamine 1-carboxyvinyltransferase | ATY41_10955 | Not Available | Positive | 818659 - 820029 | 48707.0 |
| acyl-phosphate glycerol 3-phosphate acyltransferase | ATY41_10960 | Not Available | Positive | 820070 - 820813 | 27155.3 |
| glycerol-3-phosphate dehydrogenase | ATY41_10965 | Not Available | Positive | 820806 - 821963 | 40557.3 |
| d-alanine--d-alanine ligase | ATY41_10970 | Not Available | Positive | 821860 - 822951 | 38605.1 |
| hypothetical protein | ATY41_10975 | Not Available | Negative | 822962 - 823462 | 17026.2 |
| thiamine-monophosphate kinase | ATY41_10980 | Not Available | Positive | 823488 - 824483 | 33266.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Ratoon stunting disease | Causes | PMC2516522 |
| Ratoon-stunting disease | Causes | PMC2516522 |
