Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Leifsonia
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Leifsonia |
| Species | Leifsonia xyli |
| Strain | subsp. xyli strain gdw1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Bacilli |
| Mobility | No |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | 20 |
| Temperature range | Mesophilic |
| Habitat | xylem |
| Biotic relationship | Free living |
| Host(s) | Oryza sativa, Zea mays subsp. mays, Cynodon dactylon |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
316022 bp
Thymine Count
319337 bp
Guanine Count
659667 bp
Cytosine Count
662381 bp
Genome Length
1957407 bp
Protein-coding Genes
1617 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | ATY41_08235 | Not Available | Negative | 69370 - 69984 | 21148.1 |
| hypothetical protein | ATY41_08240 | Not Available | Negative | 70197 - 70490 | 9625.5 |
| hypothetical protein | ATY41_08245 | Not Available | Positive | 70596 - 71513 | 32208.0 |
| dna polymerase iv | ATY41_08250 | Not Available | Negative | 71551 - 72795 | 45414.4 |
| hypothetical protein | ATY41_08260 | Not Available | Positive | 74437 - 74985 | 19536.0 |
| hypothetical protein | ATY41_08265 | Not Available | Negative | 75016 - 75324 | 11883.6 |
| hypothetical protein | ATY41_08270 | Not Available | Positive | 75325 - 75519 | 7204.58 |
| hypothetical protein | ATY41_08275 | Not Available | Positive | 75601 - 75915 | 10890.1 |
| diaminopimelate decarboxylase | ATY41_08285 | Not Available | Positive | 76784 - 78199 | 48507.5 |
| homoserine dehydrogenase | ATY41_08290 | Not Available | Positive | 78196 - 79551 | 46410.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Ratoon stunting disease | Causes | PMC2516522 |
| Ratoon-stunting disease | Causes | PMC2516522 |
