Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Leifsonia
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Leifsonia |
| Species | Leifsonia xyli |
| Strain | subsp. xyli strain gdw1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Bacilli |
| Mobility | No |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | 20 |
| Temperature range | Mesophilic |
| Habitat | xylem |
| Biotic relationship | Free living |
| Host(s) | Oryza sativa, Zea mays subsp. mays, Cynodon dactylon |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
316022 bp
Thymine Count
319337 bp
Guanine Count
659667 bp
Cytosine Count
662381 bp
Genome Length
1957407 bp
Protein-coding Genes
1617 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | ATY41_10800 | Not Available | Positive | 790455 - 791090 | 21552.9 |
| hypothetical protein | ATY41_10805 | Not Available | Positive | 791172 - 791351 | 6379.82 |
| hypothetical protein | ATY41_10810 | Not Available | Positive | 791329 - 791676 | 11490.9 |
| hypothetical protein | ATY41_10815 | Not Available | Positive | 791853 - 792152 | 9511.8 |
| hypothetical protein | ATY41_10820 | Not Available | Negative | 792186 - 792437 | 8986.64 |
| dna topoisomerase i | ATY41_10825 | Not Available | Positive | 792676 - 795519 | 102839.0 |
| thymidylate kinase | ATY41_10830 | Not Available | Positive | 795516 - 796148 | 23011.5 |
| dna polymerase iii subunit delta' | ATY41_10835 | Not Available | Positive | 796189 - 797379 | 42588.2 |
| peptidase | ATY41_10840 | Not Available | Positive | 797376 - 798932 | 54617.5 |
| antitoxin maze | ATY41_10855 | Not Available | Positive | 800015 - 800182 | 6266.08 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Ratoon stunting disease | Causes | PMC2516522 |
| Ratoon-stunting disease | Causes | PMC2516522 |
