Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Leifsonia
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Leifsonia |
| Species | Leifsonia xyli |
| Strain | subsp. xyli strain gdw1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Bacilli |
| Mobility | No |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | 20 |
| Temperature range | Mesophilic |
| Habitat | xylem |
| Biotic relationship | Free living |
| Host(s) | Oryza sativa, Zea mays subsp. mays, Cynodon dactylon |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
316022 bp
Thymine Count
319337 bp
Guanine Count
659667 bp
Cytosine Count
662381 bp
Genome Length
1957407 bp
Protein-coding Genes
1617 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| nad(+) kinase | ATY41_10560 | Not Available | Negative | 748859 - 749773 | 32239.9 |
| hypothetical protein | ATY41_10565 | Not Available | Negative | 749898 - 750272 | 13314.9 |
| hypothetical protein | ATY41_10575 | Not Available | Positive | 751996 - 753666 | 59737.4 |
| hypothetical protein | ATY41_10580 | Not Available | Positive | 753663 - 754097 | 15155.5 |
| hypothetical protein | ATY41_10585 | Not Available | Positive | 754204 - 754659 | 16113.6 |
| hypothetical protein | ATY41_10595 | Not Available | Positive | 755599 - 755919 | 11187.3 |
| aaa family atpase | ATY41_10615 | Not Available | Positive | 759475 - 760284 | 30000.9 |
| hypothetical protein | ATY41_10620 | Not Available | Negative | 761154 - 761780 | 23562.7 |
| hypothetical protein | ATY41_10625 | Not Available | Negative | 761848 - 762246 | 13814.4 |
| hypothetical protein | ATY41_10630 | Not Available | Positive | 762442 - 762759 | 11584.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Ratoon stunting disease | Causes | PMC2516522 |
| Ratoon-stunting disease | Causes | PMC2516522 |
