Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Leifsonia
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Leifsonia |
| Species | Leifsonia xyli |
| Strain | subsp. xyli strain gdw1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Bacilli |
| Mobility | No |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | 20 |
| Temperature range | Mesophilic |
| Habitat | xylem |
| Biotic relationship | Free living |
| Host(s) | Oryza sativa, Zea mays subsp. mays, Cynodon dactylon |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
316022 bp
Thymine Count
319337 bp
Guanine Count
659667 bp
Cytosine Count
662381 bp
Genome Length
1957407 bp
Protein-coding Genes
1617 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| molecular chaperone dnaj | ATY41_10400 | Not Available | Negative | 718857 - 719966 | 39648.0 |
| hrca family transcriptional regulator | ATY41_10405 | Not Available | Negative | 720037 - 721056 | 36330.5 |
| hypothetical protein | ATY41_10410 | Not Available | Positive | 721300 - 721677 | 13574.8 |
| coproporphyrinogen iii oxidase | ATY41_10415 | Not Available | Negative | 721690 - 722931 | 44269.2 |
| hypothetical protein | ATY41_10420 | Not Available | Negative | 722931 - 723578 | 23753.3 |
| elongation factor 4 | ATY41_10425 | Not Available | Negative | 723694 - 725544 | 67525.8 |
| hypothetical protein | ATY41_10430 | Not Available | Negative | 725598 - 725939 | 12580.0 |
| epimerase | ATY41_10435 | Not Available | Positive | 725938 - 726861 | 30483.0 |
| 30s ribosomal protein s20 | ATY41_10440 | Not Available | Positive | 726968 - 727228 | 9310.35 |
| dna polymerase iii subunit delta | ATY41_10445 | Not Available | Negative | 727350 - 728390 | 36675.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Ratoon stunting disease | Causes | PMC2516522 |
| Ratoon-stunting disease | Causes | PMC2516522 |
