Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Leifsonia
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Leifsonia |
| Species | Leifsonia xyli |
| Strain | subsp. xyli strain gdw1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Bacilli |
| Mobility | No |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | 20 |
| Temperature range | Mesophilic |
| Habitat | xylem |
| Biotic relationship | Free living |
| Host(s) | Oryza sativa, Zea mays subsp. mays, Cynodon dactylon |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
316022 bp
Thymine Count
319337 bp
Guanine Count
659667 bp
Cytosine Count
662381 bp
Genome Length
1957407 bp
Protein-coding Genes
1617 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| luxr family transcriptional regulator | ATY41_10350 | Not Available | Negative | 709407 - 710084 | 24024.8 |
| hypothetical protein | ATY41_10355 | Not Available | Negative | 710081 - 711949 | 66181.0 |
| hypothetical protein | ATY41_10360 | Not Available | Negative | 712192 - 712812 | 22383.1 |
| hypothetical protein | ATY41_10365 | Not Available | Negative | 712854 - 713534 | 23706.7 |
| gtpase era | ATY41_10370 | Not Available | Negative | 713938 - 714831 | 32909.6 |
| hemolysin | ATY41_10375 | Not Available | Negative | 714828 - 716177 | 48514.1 |
| rrna maturation rnase ybey | ATY41_10380 | Not Available | Negative | 716187 - 716648 | 17011.3 |
| phosphate starvation-inducible protein phoh | ATY41_10385 | Not Available | Negative | 716645 - 717748 | 40125.2 |
| histidine triad nucleotide-binding protein | ATY41_10390 | Not Available | Negative | 717735 - 718106 | 13217.5 |
| 16s rrna methyltransferase | ATY41_10395 | Not Available | Negative | 718130 - 718855 | 25495.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Ratoon stunting disease | Causes | PMC2516522 |
| Ratoon-stunting disease | Causes | PMC2516522 |
