Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Leifsonia
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Leifsonia |
| Species | Leifsonia xyli |
| Strain | subsp. xyli strain gdw1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Bacilli |
| Mobility | No |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | 20 |
| Temperature range | Mesophilic |
| Habitat | xylem |
| Biotic relationship | Free living |
| Host(s) | Oryza sativa, Zea mays subsp. mays, Cynodon dactylon |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
316022 bp
Thymine Count
319337 bp
Guanine Count
659667 bp
Cytosine Count
662381 bp
Genome Length
1957407 bp
Protein-coding Genes
1617 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | ATY41_08175 | Not Available | Negative | 62036 - 62227 | 6665.59 |
| oligoribonuclease | ATY41_08185 | Not Available | Negative | 62577 - 63200 | 23008.4 |
| hypothetical protein | ATY41_08190 | Not Available | Negative | 63211 - 64050 | 30011.9 |
| thioredoxin | ATY41_08195 | Not Available | Positive | 64143 - 64442 | 10264.2 |
| hypothetical protein | ATY41_08200 | Not Available | Positive | 64835 - 65587 | 26389.7 |
| hypothetical protein | ATY41_08205 | Not Available | Positive | 65645 - 65848 | 7226.69 |
| hypothetical protein | ATY41_08210 | Not Available | Positive | 65845 - 66201 | 13666.0 |
| atp-binding protein | ATY41_08220 | Not Available | Negative | 66464 - 67087 | 22551.6 |
| abc transporter | ATY41_08225 | Not Available | Negative | 67071 - 67850 | 26768.4 |
| abc transporter atp-binding protein | ATY41_08230 | Not Available | Negative | 67847 - 69445 | 54378.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Ratoon stunting disease | Causes | PMC2516522 |
| Ratoon-stunting disease | Causes | PMC2516522 |
