Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Leifsonia
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Leifsonia |
| Species | Leifsonia xyli |
| Strain | subsp. xyli strain gdw1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Bacilli |
| Mobility | No |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | 20 |
| Temperature range | Mesophilic |
| Habitat | xylem |
| Biotic relationship | Free living |
| Host(s) | Oryza sativa, Zea mays subsp. mays, Cynodon dactylon |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
316022 bp
Thymine Count
319337 bp
Guanine Count
659667 bp
Cytosine Count
662381 bp
Genome Length
1957407 bp
Protein-coding Genes
1617 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | ATY41_10300 | Not Available | Positive | 697527 - 697748 | 8480.99 |
| glyoxalase | ATY41_10305 | Not Available | Negative | 698077 - 698469 | 14452.6 |
| udp pyrophosphate synthase | ATY41_10310 | Not Available | Negative | 698830 - 699636 | 30618.4 |
| dna repair protein reco | ATY41_10315 | Not Available | Negative | 699633 - 700382 | 26720.8 |
| hypothetical protein | ATY41_10320 | Not Available | Positive | 700415 - 701173 | 26585.3 |
| 2-isopropylmalate synthase | ATY41_10325 | Not Available | Negative | 701270 - 703042 | 64821.2 |
| hypothetical protein | ATY41_10330 | Not Available | Negative | 703181 - 705649 | 89345.0 |
| hypothetical protein | ATY41_10335 | Not Available | Negative | 705724 - 706986 | 43747.3 |
| abc transporter permease | ATY41_10340 | Not Available | Negative | 707141 - 708580 | 48599.8 |
| peptide abc transporter atp-binding protein | ATY41_10345 | Not Available | Negative | 708577 - 709326 | 26758.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Ratoon stunting disease | Causes | PMC2516522 |
| Ratoon-stunting disease | Causes | PMC2516522 |
