Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Leifsonia
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Leifsonia |
| Species | Leifsonia xyli |
| Strain | subsp. xyli strain gdw1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Bacilli |
| Mobility | No |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | 20 |
| Temperature range | Mesophilic |
| Habitat | xylem |
| Biotic relationship | Free living |
| Host(s) | Oryza sativa, Zea mays subsp. mays, Cynodon dactylon |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
316022 bp
Thymine Count
319337 bp
Guanine Count
659667 bp
Cytosine Count
662381 bp
Genome Length
1957407 bp
Protein-coding Genes
1617 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| isochorismate synthase | ATY41_10175 | Not Available | Negative | 668565 - 669839 | 44468.4 |
| ubiquinone biosynthesis methyltransferase ubie | ATY41_10180 | Not Available | Positive | 669987 - 671081 | 37901.4 |
| geranylgeranyl pyrophosphate synthase | ATY41_10185 | Not Available | Positive | 671099 - 672160 | 38291.5 |
| pyridine nucleotide-disulfide oxidoreductase | ATY41_10190 | Not Available | Positive | 672179 - 673549 | 50508.0 |
| hypothetical protein | ATY41_10195 | Not Available | Negative | 674060 - 675118 | 37992.0 |
| hypothetical protein | ATY41_10200 | Not Available | Negative | 675411 - 675695 | 10446.8 |
| hypothetical protein | ATY41_10205 | Not Available | Negative | 676195 - 676683 | 17980.6 |
| hypothetical protein | ATY41_10215 | Not Available | Positive | 677868 - 678467 | 21021.2 |
| hypothetical protein | ATY41_10220 | Not Available | Positive | 678486 - 679040 | 20200.4 |
| hypothetical protein | ATY41_10225 | Not Available | Positive | 679671 - 681737 | 74587.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Ratoon stunting disease | Causes | PMC2516522 |
| Ratoon-stunting disease | Causes | PMC2516522 |
