Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Leifsonia
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Leifsonia |
| Species | Leifsonia xyli |
| Strain | subsp. xyli strain gdw1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Bacilli |
| Mobility | No |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | 20 |
| Temperature range | Mesophilic |
| Habitat | xylem |
| Biotic relationship | Free living |
| Host(s) | Oryza sativa, Zea mays subsp. mays, Cynodon dactylon |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
316022 bp
Thymine Count
319337 bp
Guanine Count
659667 bp
Cytosine Count
662381 bp
Genome Length
1957407 bp
Protein-coding Genes
1617 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| pyrroline-5-carboxylate reductase | ATY41_10125 | Not Available | Positive | 661144 - 661992 | 28260.8 |
| hypothetical protein | ATY41_10130 | Not Available | Positive | 662102 - 662605 | 18652.5 |
| potassium transporter | ATY41_10135 | Not Available | Negative | 662869 - 663540 | 24096.0 |
| potassium transporter trk | ATY41_10140 | Not Available | Negative | 663533 - 664969 | 50543.9 |
| transcriptional regulator | ATY41_10145 | Not Available | Positive | 665037 - 665459 | 15904.9 |
| excisionase | ATY41_10150 | Not Available | Positive | 665555 - 665764 | 7463.11 |
| thioredoxin | ATY41_10155 | Not Available | Positive | 666049 - 666318 | 9989.2 |
| stress responsive alpha-beta barrel domain-containing protein | ATY41_10160 | Not Available | Positive | 666315 - 666617 | 10973.2 |
| gntr family transcriptional regulator | ATY41_10165 | Not Available | Negative | 666688 - 667389 | 25891.0 |
| gntr family transcriptional regulator | ATY41_10170 | Not Available | Negative | 667389 - 668063 | 24812.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Ratoon stunting disease | Causes | PMC2516522 |
| Ratoon-stunting disease | Causes | PMC2516522 |
