Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Leifsonia
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Leifsonia |
| Species | Leifsonia xyli |
| Strain | subsp. xyli strain gdw1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Bacilli |
| Mobility | No |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | 20 |
| Temperature range | Mesophilic |
| Habitat | xylem |
| Biotic relationship | Free living |
| Host(s) | Oryza sativa, Zea mays subsp. mays, Cynodon dactylon |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
316022 bp
Thymine Count
319337 bp
Guanine Count
659667 bp
Cytosine Count
662381 bp
Genome Length
1957407 bp
Protein-coding Genes
1617 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glucose-1-phosphate adenylyltransferase | ATY41_02455 | Not Available | Negative | 641159 - 642403 | 44776.3 |
| abc transporter atp-binding protein | ATY41_02465 | Not Available | Positive | 643666 - 644466 | 28638.2 |
| 50s ribosomal protein l31 | ATY41_02470 | Not Available | Positive | 644586 - 644837 | 9361.94 |
| hypothetical protein | ATY41_02475 | Not Available | Negative | 645069 - 645365 | 10182.7 |
| dna polymerase iii subunit epsilon | ATY41_02480 | Not Available | Negative | 645536 - 646219 | 25117.8 |
| trehalose synthase | ATY41_02485 | Not Available | Negative | 646281 - 647990 | 65684.9 |
| hydrolase | ATY41_02490 | Not Available | Positive | 648094 - 649035 | 34012.2 |
| mannosyltransferase | ATY41_02495 | Not Available | Positive | 649032 - 650114 | 40175.6 |
| hypothetical protein | ATY41_10055 | Not Available | Negative | 651082 - 651966 | 29881.5 |
| hypothetical protein | ATY41_10060 | Not Available | Negative | 652687 - 652929 | 8876.98 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Ratoon stunting disease | Causes | PMC2516522 |
| Ratoon-stunting disease | Causes | PMC2516522 |
