Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Leifsonia
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Leifsonia |
| Species | Leifsonia xyli |
| Strain | subsp. xyli strain gdw1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Bacilli |
| Mobility | No |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | 20 |
| Temperature range | Mesophilic |
| Habitat | xylem |
| Biotic relationship | Free living |
| Host(s) | Oryza sativa, Zea mays subsp. mays, Cynodon dactylon |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
316022 bp
Thymine Count
319337 bp
Guanine Count
659667 bp
Cytosine Count
662381 bp
Genome Length
1957407 bp
Protein-coding Genes
1617 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| abc transporter permease | ATY41_02405 | Not Available | Positive | 633799 - 634983 | 41810.9 |
| non-heme iron oxygenase ferredoxin subunit | ATY41_02410 | Not Available | Positive | 634983 - 635312 | 11512.7 |
| fe-s cluster assembly atpase sufc | ATY41_02415 | Not Available | Positive | 635315 - 636109 | 28570.9 |
| hypothetical protein | ATY41_02420 | Not Available | Positive | 636119 - 636448 | 12058.4 |
| abc transporter | ATY41_02425 | Not Available | Positive | 636555 - 638153 | 57415.8 |
| sortase | ATY41_02430 | Not Available | Negative | 638168 - 639037 | 31668.3 |
| hypothetical protein | ATY41_02435 | Not Available | Negative | 639034 - 639270 | 8635.35 |
| hypothetical protein | ATY41_02440 | Not Available | Negative | 639267 - 639506 | 8444.49 |
| beta-ketoacyl-acp reductase | ATY41_02445 | Not Available | Positive | 639651 - 640361 | 24588.4 |
| phosphoserine phosphatase | ATY41_02450 | Not Available | Negative | 640474 - 641172 | 25367.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Ratoon stunting disease | Causes | PMC2516522 |
| Ratoon-stunting disease | Causes | PMC2516522 |
