Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Leifsonia
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Leifsonia |
| Species | Leifsonia xyli |
| Strain | subsp. xyli strain gdw1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Bacilli |
| Mobility | No |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | 20 |
| Temperature range | Mesophilic |
| Habitat | xylem |
| Biotic relationship | Free living |
| Host(s) | Oryza sativa, Zea mays subsp. mays, Cynodon dactylon |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
316022 bp
Thymine Count
319337 bp
Guanine Count
659667 bp
Cytosine Count
662381 bp
Genome Length
1957407 bp
Protein-coding Genes
1617 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| electron transporter | ATY41_02355 | Not Available | Positive | 620834 - 621199 | 13198.3 |
| 6-phosphogluconolactonase | ATY41_02360 | Not Available | Negative | 621279 - 622049 | 28081.1 |
| opca protein | ATY41_02365 | Not Available | Negative | 622046 - 623008 | 34212.5 |
| glucose-6-phosphate dehydrogenase | ATY41_02370 | Not Available | Negative | 623005 - 624546 | 57546.3 |
| glucose-6-phosphate isomerase | ATY41_02375 | Not Available | Negative | 624573 - 626183 | 55716.3 |
| transaldolase | ATY41_02380 | Not Available | Negative | 626180 - 627325 | 39743.7 |
| transketolase | ATY41_02385 | Not Available | Negative | 627357 - 629450 | 74880.3 |
| protoheme ix farnesyltransferase | ATY41_02390 | Not Available | Positive | 629747 - 630670 | 33630.2 |
| cytochrome oxidase assembly protein | ATY41_02395 | Not Available | Negative | 631113 - 632039 | 32017.1 |
| fe-s cluster assembly protein sufb | ATY41_02400 | Not Available | Positive | 632337 - 633755 | 52783.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Ratoon stunting disease | Causes | PMC2516522 |
| Ratoon-stunting disease | Causes | PMC2516522 |
