Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Leifsonia
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Leifsonia |
| Species | Leifsonia xyli |
| Strain | subsp. xyli strain gdw1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Bacilli |
| Mobility | No |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | 20 |
| Temperature range | Mesophilic |
| Habitat | xylem |
| Biotic relationship | Free living |
| Host(s) | Oryza sativa, Zea mays subsp. mays, Cynodon dactylon |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
316022 bp
Thymine Count
319337 bp
Guanine Count
659667 bp
Cytosine Count
662381 bp
Genome Length
1957407 bp
Protein-coding Genes
1617 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| pyruvate kinase | ATY41_02240 | Not Available | Positive | 593108 - 594574 | 52443.0 |
| hypothetical protein | ATY41_02250 | Not Available | Negative | 595637 - 596431 | 27121.9 |
| transcriptional regulator | ATY41_02265 | Not Available | Positive | 598062 - 598667 | 22103.7 |
| thioesterase | ATY41_02270 | Not Available | Negative | 598737 - 599141 | 14313.3 |
| dna polymerase i | ATY41_02275 | Not Available | Positive | 599209 - 601896 | 97865.2 |
| hypothetical protein | ATY41_02280 | Not Available | Positive | 601927 - 603600 | 61588.3 |
| 30s ribosomal protein s1 | ATY41_02285 | Not Available | Positive | 603994 - 605436 | 52854.1 |
| dephospho-coa kinase | ATY41_02290 | Not Available | Positive | 605549 - 606145 | 20822.8 |
| excinuclease abc subunit b | ATY41_02295 | Not Available | Positive | 606223 - 608289 | 76790.6 |
| hypothetical protein | ATY41_02300 | Not Available | Negative | 608471 - 608794 | 11621.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Ratoon stunting disease | Causes | PMC2516522 |
| Ratoon-stunting disease | Causes | PMC2516522 |
