Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Leifsonia
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Leifsonia |
| Species | Leifsonia xyli |
| Strain | subsp. xyli strain gdw1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Bacilli |
| Mobility | No |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | 20 |
| Temperature range | Mesophilic |
| Habitat | xylem |
| Biotic relationship | Free living |
| Host(s) | Oryza sativa, Zea mays subsp. mays, Cynodon dactylon |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
316022 bp
Thymine Count
319337 bp
Guanine Count
659667 bp
Cytosine Count
662381 bp
Genome Length
1957407 bp
Protein-coding Genes
1617 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| phosphoribosyl-amp cyclohydrolase | ATY41_02190 | Not Available | Positive | 579942 - 580319 | 13988.5 |
| anthranilate synthase | ATY41_02195 | Not Available | Positive | 580367 - 581926 | 55321.8 |
| hypothetical protein | ATY41_02200 | Not Available | Positive | 581916 - 582614 | 23468.2 |
| hypothetical protein | ATY41_02205 | Not Available | Positive | 582684 - 582944 | 8693.61 |
| indole-3-glycerol phosphate synthase | ATY41_02210 | Not Available | Positive | 582961 - 583731 | 27118.4 |
| tryptophan synthase subunit beta | ATY41_02215 | Not Available | Positive | 583731 - 584942 | 42796.9 |
| tryptophan synthase subunit alpha | ATY41_02220 | Not Available | Positive | 584939 - 585724 | 26768.9 |
| prolipoprotein diacylglyceryl transferase | ATY41_02225 | Not Available | Positive | 585806 - 586810 | 36748.5 |
| glutamate synthase subunit alpha | ATY41_02230 | Not Available | Positive | 586966 - 591543 | 164743.0 |
| glutamate synthase | ATY41_02235 | Not Available | Positive | 591586 - 593043 | 52424.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Ratoon stunting disease | Causes | PMC2516522 |
| Ratoon-stunting disease | Causes | PMC2516522 |
