Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Leifsonia
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Leifsonia |
| Species | Leifsonia xyli |
| Strain | subsp. xyli strain gdw1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Bacilli |
| Mobility | No |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | 20 |
| Temperature range | Mesophilic |
| Habitat | xylem |
| Biotic relationship | Free living |
| Host(s) | Oryza sativa, Zea mays subsp. mays, Cynodon dactylon |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
316022 bp
Thymine Count
319337 bp
Guanine Count
659667 bp
Cytosine Count
662381 bp
Genome Length
1957407 bp
Protein-coding Genes
1617 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| guanylate kinase | ATY41_02135 | Not Available | Positive | 568975 - 569937 | 34923.9 |
| dna-directed rna polymerase subunit omega | ATY41_02140 | Not Available | Positive | 570026 - 570289 | 9529.27 |
| phosphopantothenoylcysteine decarboxylase | ATY41_02145 | Not Available | Positive | 570388 - 571671 | 44645.9 |
| s-adenosylmethionine synthetase | ATY41_02150 | Not Available | Positive | 571713 - 572906 | 42842.7 |
| preprotein translocase subunit seca | ATY41_02155 | Not Available | Positive | 572909 - 574882 | 69547.6 |
| methionyl-trna formyltransferase | ATY41_02160 | Not Available | Positive | 574932 - 575840 | 31811.6 |
| ribulose phosphate epimerase | ATY41_02170 | Not Available | Positive | 577365 - 578027 | 23691.4 |
| phosphoribosyl-atp pyrophosphatase | ATY41_02175 | Not Available | Positive | 578030 - 578293 | 9635.41 |
| atp phosphoribosyltransferase | ATY41_02180 | Not Available | Positive | 578342 - 579181 | 28988.9 |
| imidazole glycerol phosphate synthase cyclase subunit | ATY41_02185 | Not Available | Positive | 579181 - 579945 | 26109.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Ratoon stunting disease | Causes | PMC2516522 |
| Ratoon-stunting disease | Causes | PMC2516522 |
