Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Leifsonia
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Leifsonia |
| Species | Leifsonia xyli |
| Strain | subsp. xyli strain gdw1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Bacilli |
| Mobility | No |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | 20 |
| Temperature range | Mesophilic |
| Habitat | xylem |
| Biotic relationship | Free living |
| Host(s) | Oryza sativa, Zea mays subsp. mays, Cynodon dactylon |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
316022 bp
Thymine Count
319337 bp
Guanine Count
659667 bp
Cytosine Count
662381 bp
Genome Length
1957407 bp
Protein-coding Genes
1617 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | ATY41_02085 | Not Available | Positive | 557211 - 558704 | 50966.2 |
| hypothetical protein | ATY41_02090 | Not Available | Positive | 559263 - 559502 | 9256.92 |
| hypothetical protein | ATY41_02095 | Not Available | Positive | 559507 - 559917 | 15761.8 |
| transcriptional regulator | ATY41_02100 | Not Available | Positive | 560326 - 560877 | 19664.7 |
| aspartate carbamoyltransferase | ATY41_02105 | Not Available | Positive | 560874 - 561821 | 33966.8 |
| dihydroorotase | ATY41_02110 | Not Available | Positive | 561839 - 563155 | 45449.0 |
| hypothetical protein | ATY41_02115 | Not Available | Positive | 563440 - 563673 | 7806.11 |
| carbamoyl-phosphate synthase small subunit | ATY41_02120 | Not Available | Positive | 563675 - 564826 | 40911.3 |
| carbamoyl phosphate synthase large subunit | ATY41_02125 | Not Available | Positive | 564826 - 568107 | 117612.0 |
| orotidine 5'-phosphate decarboxylase | ATY41_02130 | Not Available | Positive | 568155 - 568982 | 27820.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Ratoon stunting disease | Causes | PMC2516522 |
| Ratoon-stunting disease | Causes | PMC2516522 |
