Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Leifsonia
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Leifsonia |
| Species | Leifsonia xyli |
| Strain | subsp. xyli strain gdw1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Bacilli |
| Mobility | No |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | 20 |
| Temperature range | Mesophilic |
| Habitat | xylem |
| Biotic relationship | Free living |
| Host(s) | Oryza sativa, Zea mays subsp. mays, Cynodon dactylon |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
316022 bp
Thymine Count
319337 bp
Guanine Count
659667 bp
Cytosine Count
662381 bp
Genome Length
1957407 bp
Protein-coding Genes
1617 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | ATY41_02030 | Not Available | Positive | 545347 - 546846 | 53635.0 |
| chorismate synthase | ATY41_02040 | Not Available | Positive | 548431 - 549639 | 41945.3 |
| shikimate kinase | ATY41_02045 | Not Available | Positive | 549632 - 550180 | 19510.4 |
| 3-dehydroquinate synthase | ATY41_02050 | Not Available | Positive | 550177 - 551256 | 38429.3 |
| hypothetical protein | ATY41_02055 | Not Available | Positive | 551367 - 551594 | 8043.62 |
| 3-dehydroquinate dehydratase | ATY41_02060 | Not Available | Positive | 551600 - 552037 | 15669.6 |
| elongation factor p | ATY41_02065 | Not Available | Positive | 552140 - 552703 | 20468.1 |
| n utilization substance protein b | ATY41_02070 | Not Available | Positive | 552703 - 553137 | 15818.6 |
| hypothetical protein | ATY41_02075 | Not Available | Positive | 553134 - 553841 | 24458.8 |
| hypothetical protein | ATY41_02080 | Not Available | Positive | 554738 - 557239 | 89889.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Ratoon stunting disease | Causes | PMC2516522 |
| Ratoon-stunting disease | Causes | PMC2516522 |
