Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Leifsonia
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Leifsonia |
| Species | Leifsonia xyli |
| Strain | subsp. xyli strain gdw1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Bacilli |
| Mobility | No |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | 20 |
| Temperature range | Mesophilic |
| Habitat | xylem |
| Biotic relationship | Free living |
| Host(s) | Oryza sativa, Zea mays subsp. mays, Cynodon dactylon |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
316022 bp
Thymine Count
319337 bp
Guanine Count
659667 bp
Cytosine Count
662381 bp
Genome Length
1957407 bp
Protein-coding Genes
1617 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| gtp pyrophosphokinase | ATY41_01980 | Not Available | Positive | 534144 - 536393 | 82900.3 |
| hypothetical protein | ATY41_01985 | Not Available | Negative | 536380 - 536964 | 21314.8 |
| atpase | ATY41_01990 | Not Available | Negative | 537081 - 538310 | 45554.2 |
| peptidylprolyl isomerase | ATY41_01995 | Not Available | Negative | 538368 - 539138 | 26637.4 |
| aaa family atpase | ATY41_02000 | Not Available | Positive | 539310 - 540596 | 45712.6 |
| 30s ribosomal protein s4 | ATY41_02005 | Not Available | Positive | 540780 - 541403 | 23447.5 |
| hypothetical protein | ATY41_02010 | Not Available | Positive | 541512 - 541889 | 12732.6 |
| hypothetical protein | ATY41_02015 | Not Available | Positive | 541951 - 542142 | 7033.28 |
| alanine--trna ligase | ATY41_02020 | Not Available | Positive | 542187 - 544844 | 94585.3 |
| holliday junction resolvase | ATY41_02025 | Not Available | Positive | 544860 - 545315 | 15613.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Ratoon stunting disease | Causes | PMC2516522 |
| Ratoon-stunting disease | Causes | PMC2516522 |
