Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Leifsonia
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Leifsonia |
| Species | Leifsonia xyli |
| Strain | subsp. xyli strain gdw1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Bacilli |
| Mobility | No |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | 20 |
| Temperature range | Mesophilic |
| Habitat | xylem |
| Biotic relationship | Free living |
| Host(s) | Oryza sativa, Zea mays subsp. mays, Cynodon dactylon |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
316022 bp
Thymine Count
319337 bp
Guanine Count
659667 bp
Cytosine Count
662381 bp
Genome Length
1957407 bp
Protein-coding Genes
1617 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| pyridoxal biosynthesis lyase pdxs | ATY41_01930 | Not Available | Positive | 525795 - 526694 | 31598.0 |
| glutamine amidotransferase | ATY41_01935 | Not Available | Positive | 526684 - 527280 | 20826.2 |
| transcriptional regulator | ATY41_01940 | Not Available | Positive | 527345 - 528103 | 26699.3 |
| holliday junction resolvase | ATY41_01945 | Not Available | Positive | 528116 - 528742 | 21350.0 |
| holliday junction atp-dependent dna helicase ruva | ATY41_01950 | Not Available | Positive | 528739 - 529362 | 21046.3 |
| atp-dependent dna helicase ruvb | ATY41_01955 | Not Available | Positive | 529359 - 530402 | 37581.3 |
| preprotein translocase subunit yajc | ATY41_01960 | Not Available | Positive | 530474 - 530875 | 14596.5 |
| preprotein translocase subunit secd | ATY41_01965 | Not Available | Positive | 530943 - 532673 | 61028.0 |
| preprotein translocase subunit secf | ATY41_01970 | Not Available | Positive | 532673 - 533689 | 36498.2 |
| sulfurtransferase | ATY41_01975 | Not Available | Positive | 533699 - 534052 | 12409.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Ratoon stunting disease | Causes | PMC2516522 |
| Ratoon-stunting disease | Causes | PMC2516522 |
