Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Leifsonia
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Leifsonia |
| Species | Leifsonia xyli |
| Strain | subsp. xyli strain gdw1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Bacilli |
| Mobility | No |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | 20 |
| Temperature range | Mesophilic |
| Habitat | xylem |
| Biotic relationship | Free living |
| Host(s) | Oryza sativa, Zea mays subsp. mays, Cynodon dactylon |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
316022 bp
Thymine Count
319337 bp
Guanine Count
659667 bp
Cytosine Count
662381 bp
Genome Length
1957407 bp
Protein-coding Genes
1617 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ammonium transporter | ATY41_01855 | Not Available | Positive | 514524 - 515714 | 39442.4 |
| hypothetical protein | ATY41_01860 | Not Available | Negative | 515738 - 516403 | 23109.4 |
| dna mismatch repair protein mutt | ATY41_01870 | Not Available | Positive | 517907 - 518353 | 16568.8 |
| hypothetical protein | ATY41_01895 | Not Available | Positive | 519563 - 519745 | 6336.56 |
| hypothetical protein | ATY41_01900 | Not Available | Positive | 519902 - 520465 | 20153.1 |
| hypothetical protein | ATY41_01905 | Not Available | Positive | 520447 - 520887 | 15159.0 |
| threonine--trna ligase | ATY41_01910 | Not Available | Positive | 520907 - 522883 | 73922.3 |
| hit family hydrolase | ATY41_01915 | Not Available | Positive | 522871 - 523497 | 22803.8 |
| pyridoxamine kinase | ATY41_01920 | Not Available | Negative | 523528 - 524379 | 30102.8 |
| transcriptional regulator | ATY41_01925 | Not Available | Negative | 524376 - 525725 | 48128.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Ratoon stunting disease | Causes | PMC2516522 |
| Ratoon-stunting disease | Causes | PMC2516522 |
