Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Leifsonia
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Leifsonia |
| Species | Leifsonia xyli |
| Strain | subsp. xyli strain gdw1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Bacilli |
| Mobility | No |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | 20 |
| Temperature range | Mesophilic |
| Habitat | xylem |
| Biotic relationship | Free living |
| Host(s) | Oryza sativa, Zea mays subsp. mays, Cynodon dactylon |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
316022 bp
Thymine Count
319337 bp
Guanine Count
659667 bp
Cytosine Count
662381 bp
Genome Length
1957407 bp
Protein-coding Genes
1617 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 1-deoxy-d-xylulose-5-phosphate synthase | ATY41_01795 | Not Available | Positive | 500627 - 502579 | 70392.9 |
| hypothetical protein | ATY41_01800 | Not Available | Negative | 502539 - 502796 | 9169.9 |
| 3-hydroxyacyl-coa dehydrogenase | ATY41_01810 | Not Available | Negative | 503829 - 505967 | 76671.4 |
| acetyl-coa acetyltransferase | ATY41_01815 | Not Available | Negative | 505975 - 507201 | 43248.0 |
| ribonuclease d | ATY41_01820 | Not Available | Negative | 507272 - 508468 | 43264.3 |
| hypothetical protein | ATY41_01825 | Not Available | Negative | 508461 - 509057 | 20785.6 |
| cysteine desufuration protein sufe | ATY41_01835 | Not Available | Negative | 510320 - 510760 | 15872.0 |
| thiosulfate sulfurtransferase | ATY41_01840 | Not Available | Negative | 510757 - 511650 | 32726.5 |
| atpase | ATY41_01845 | Not Available | Positive | 511775 - 512827 | 37646.9 |
| ammonia channel protein | ATY41_01850 | Not Available | Positive | 513036 - 514310 | 44098.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Ratoon stunting disease | Causes | PMC2516522 |
| Ratoon-stunting disease | Causes | PMC2516522 |
