Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Leifsonia
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Leifsonia |
| Species | Leifsonia xyli |
| Strain | subsp. xyli strain gdw1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Bacilli |
| Mobility | No |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | 20 |
| Temperature range | Mesophilic |
| Habitat | xylem |
| Biotic relationship | Free living |
| Host(s) | Oryza sativa, Zea mays subsp. mays, Cynodon dactylon |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
316022 bp
Thymine Count
319337 bp
Guanine Count
659667 bp
Cytosine Count
662381 bp
Genome Length
1957407 bp
Protein-coding Genes
1617 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dna topoisomerase iv | ATY41_01745 | Not Available | Negative | 487499 - 489970 | 88006.5 |
| hypothetical protein | ATY41_01750 | Not Available | Positive | 490037 - 491161 | 39487.1 |
| dna-binding protein | ATY41_01755 | Not Available | Negative | 491175 - 492272 | 39136.6 |
| dutpase | ATY41_01760 | Not Available | Positive | 492479 - 492772 | 10579.3 |
| hypothetical protein | ATY41_01765 | Not Available | Negative | 492785 - 493231 | 16502.4 |
| deoxyuridine 5'-triphosphate nucleotidohydrolase | ATY41_01770 | Not Available | Positive | 493272 - 493730 | 15850.0 |
| hypothetical protein | ATY41_01775 | Not Available | Positive | 493727 - 494371 | 22925.0 |
| hypothetical protein | ATY41_01780 | Not Available | Positive | 494380 - 495138 | 26532.9 |
| atpase | ATY41_01785 | Not Available | Positive | 495185 - 497566 | 84140.6 |
| aconitate hydratase | ATY41_01790 | Not Available | Positive | 497706 - 500549 | 101949.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Ratoon stunting disease | Causes | PMC2516522 |
| Ratoon-stunting disease | Causes | PMC2516522 |
